Variation of DNA copies number in etiology of congenital heart defects
https://doi.org/10.15829/1560-4071-2018-10-119-126
Abstract
Past decade, there is a remarkable evidence of that the variation of DNA copies number (copy number variation, CNV) is related with onset of inborn heart defects (IHD). The review is focused on an impact of CNV in IHD development. Attention is paid on widely known variations, as the microdeletions of 22q 11 chromosome region, as the novel unique variations that were discovered recent years. We assume that common regard on causation of CNV includes a description of their part and characteristics of the pathology caused. Special place does take the analysis of candidate genes in IHD etiology and mechanisms of their pathological influence under the circumstances of gene doses change. A discussion provided on which genetic characteristics of CNV are more informing in assessment of probable pathogenicity of microstructural chromosomes recomposition.
About the Authors
A. A. SlepukhinaRussian Federation
Novosibirsk.
Competing Interests: Конфликт интересов не заявляется.
I. N. Lebedev
Russian Federation
Competing Interests: Конфликт интересов не заявляется.
G. I. Lifshitz
Russian Federation
Novosibirsk.
References
1. Kearney HM, Thorland EC, Brown KK, et al. American College of Medical Genetics standards and guidelines for interpretation and reporting of postnatal constitutional copy number variants. Genet Med. 2011;13(7):680-5. doi:10.1097/GIM.0b013e3182217a3a.
2. Feuk L, Carson AR, Scherer SW. Structural variation in the human genome. Nat Rev Genet. 2006;7(2):85-97. doi:10.1038/nrg1767.
3. Zarrei M, MacDonald JR, Merico D, Scherer SW. A copy number variation map of the human genome. Nat Rev Genet. 2015;16(3):172-83. doi:10.1038/nrg3871.
4. Fahed AC, Gelb BD, Seidman JG, Seidman CE. Genetics of congenital heart disease: the glass half empty. Circ Res. 2013;112(4):707-20. doi:10.1161/CIRCRESAHA.112.300853.
5. Andersen TA, Troelsen K de LL, Larsen LA. Of mice and men: molecular genetics of congenital heart disease. Cell Mol Life Sci. 2014;71(8):1327-52. doi:10.1007/s00018-013-1430-1.
6. Lalani SR, Belmont JW. Genetic basis of congenital cardiovascular malformations. Eur J Med Genet. 2014;57(8):402-13. doi:10.1016/j.ejmg.2014.04.010.
7. Grinberg KN, Kukharenko VI. Realization of the phenotypic effect of chromosomal aberrations in humans. Vavilovskii zhurnal genetiki i selektsii. 2013;17(1):32-9. (In Russ.) .
8. Thienpont B, Mertens L, de Ravel T, et al. Submicroscopic chromosomal imbalances detected by array-CGH are a frequent cause of congenital heart defects in selected patients. Eur Heart J. 2007;28(22):2778-84. doi:10.1093/eurheartj/ehl560.
9. Lalani SR, Shaw C, Wang X, et al. Rare DNA copy number variants in cardiovascular malformations with extracardiac abnormalities. Eur J Hum Genet. 2013;21(2):173-81. doi:10.1038/ejhg.2012.155.
10. Breckpot J, Thienpont B, Peeters H, et al. Array comparative genomic hybridization as a diagnostic tool for syndromic heart defects. J Pediatr. 2010;156(5):810-7, 817 e1-817 e4. doi:10.1016/j.jpeds.2009.11.049.
11. Goldmuntz E, Paluru P, Glessner J, et al. Microdeletions and Microduplications in Patients with Congenital Heart Disease and Multiple Congenital Anomalies. Congenit Heart Dis. 2011;6(6):592-602. doi:10.1111/j.1747-0803.2011.00582.x.
12. Sanchez-Castro M, Eldjouzi H, Charpentier E, et al. Search for Rare Copy-Number Variants in Congenital Heart Defects Identifies Novel Candidate Genes and a Potential Role for FOXC1 in Patients With Coarctation of the AortaCLINICAL PERSPECTIVE. Circ Cardiovasc Genet. 2016;9(1):86-94. doi:10.1161/CIRCGENETICS.115.001213.
13. An Y, Duan W, Huang G, et al. Genome-wide copy number variant analysis for congenital ventricular septal defects in Chinese Han population. BMC Med Genomics. 2016;9(1):2. doi:10.1186/s12920-015-0163-4.
14. Carey AS, Liang L, Edwards J, et al. Effect of copy number variants on outcomes for infants with single ventricle heart defects. Circ Cardiovasc Genet. 2013;6(5):444-51. doi:101161/CIRCGENETICS.113.000189.
15. Tomita-Mitchell A, Mahnke DK, Struble CA, et al. Human gene copy number spectra analysis in congenital heart malformations. Physiol Genomics. 2012;44(9):518-41. doi:10.1152/physiolgenomics.00013.2012.
16. Geng J, Picker J, Zheng Z, et al. Chromosome microarray testing for patients with congenital heart defects reveals novel disease causing loci and high diagnostic yield. BMC Genomics. 2014;15(1):1127 doi:10.1186/1471-2164-15-1127.
17. Warburton D, Ronemus M, Kline J, et al. The contribution of de novo and rare inherited copy number changes to congenital heart disease in an unselected sample of children with conotruncal defects or hypoplastic left heart disease. Hum Genet. 2014;133(1):11-27. doi:10.1007/s00439-013-1353-9.
18. Derwinska K, Bartnik M, Wisniowiecka-Kowalnik B, et al. Assessment of the role of copy-number variants in 150 patients with congenital heart defects. Med Wieku Rozwoj. 2012;16(3):175-82.
19. Jansen FAR, Blumenfeld YJ, Fisher A, et al. Array comparative genomic hybridization and fetal congenital heart defects: a systematic review and meta-analysis. Ultrasound Obstet Gynecol. 2015;45(1):27-35. doi:10.1002/uog.14695.
20. Azamian M, Lalani SR. Cytogenomic Aberrations in Congenital Cardiovascular Malformations. Mol Syndromol. 2016;7(2):51-61. doi:10.1159/000445788.
21. Burnside RD. 22q11.21 Deletion Syndromes: A Review of Proximal, Central, and Distal Deletions and Their Associated Features. Cytogenet Genome Res. 2015;146(2):89-99. doi:10.1159/000438708.
22. Gao S, Li X, Amendt BA. Understanding the role of Tbx1 as a candidate gene for 22q11.2 deletion syndrome. Curr Allergy Asthma Rep. 2013;13(6):613-21. doi:10.1007/s11882-013-0384-6.
23. Papangeli I, Scambler P. The 22q11 deletion: DiGeorge and velocardiofacial syndromes and the role of TBX1. Wiley Interdiscip Rev Dev Biol. 2013;2(3):393-403. doi:10.1002/wdev.75.
24. Zhao J, Mommersteeg MTM. Slit-Robo signalling in heart development. Cardiovasc Res. 2018;114(6):794. doi:10.1093/cvr/cvy061.
25. Racedo SE, McDonald-McGinn DM, Chung JH, et al. Mouse and human CRKL is dosage sensitive for cardiac outflow tract formation. Am J Hum Genet. 2015;96(2):235-44. doi:10.1016/j.ajhg.2014.12.025.
26. Duell EJ, Lujan-Barroso L, Llivina C, et al. Vitamin C transporter gene (SLC23A1 and SLC23A2) polymorphisms, plasma vitamin C levels, and gastric cancer risk in the EPIC cohort. Genes Nutr. 2013;8(6):549-560. doi:10.1007/s12263-013-0346-6.
27. Peyvandi S, Lupo PJ, Garbarini J, et al. 22q11.2 deletions in patients with conotruncal defects: Data from 1,610 consecutive cases. Pediatr Cardiol. 2013;34(7):1687-94. doi:10.1007/s00246-013-0694-4.
28. Poirsier C, Besseau-Ayasse J, Schluth-Bolard C, et al. A French multicenter study of over 700 patients with 22q 11 deletions diagnosed using FISH or aCGH. Eur J Hum Genet. 2016;24(6):844-51. doi:10.1038/ejhg.2015.219.
29. Repetto GM, Guzman ML, Delgado I, et al. Case fatality rate and associated factors in patients with 22q11 microdeletion syndrome: a retrospective cohort study. BMJ Open. 2014;4(11):e005041. doi:10.1136/bmjopen-2014-005041.
30. Goldmuntz E. The 22q11.2 Deletion Syndrome. In: Congenital Heart Disease. S. Karger AG; 2015:100-11. doi:10.1159/000375208.
31. Brenner MK, Clarke S, Mahnke DK, et al. Effect of 22q11.2 deletion on bleeding and transfusion utilization in children with congenital heart disease undergoing cardiac surgery. Pediatr Res. 2016;79(2):318-24. doi:10.1038/pr.2015.216.
32. Vangkilde A, Olsen L, Hoeffding LK, et al. Schizophrenia Spectrum Disorders in a Danish 22q11.2 Deletion Syndrome Cohort Compared to the Total Danish Population-A Nationwide Register Study. Schizophr Bull. 2016;42(3):824-31. doi:10.1093/schbul/sbv195.
33. Van L, Boot E, Bassett AS. Update on the 22q11.2 deletion syndrome and its relevance to schizophrenia. Curr Opin Psychiatry. 2017:1. doi:10.1097/YCO.0000000000000324.
34. Digilio MC, Marino B. What Is New in Genetics of Congenital Heart Defects? Front Pediatr. 2016;4:120. doi:10.3389/fped.2016.00120.
35. Weise A, Mrasek K, Klein E, et al. Microdeletion and microduplication syndromes. J Histochem Cytochem. 2012;60(5):346-58. doi:10.1369/0022155412440001.
36. Rosenfeld JA, Coe BP, Eichler EE, Cuckle H, Shaffer LG. Estimates of penetrance for recurrent pathogenic copy-number variations. Genet Med. 2013;15(6):478-81. doi:10.1038/gim.2012.164.
37. Soemedi R, Topf A, Wilson IJ, et al. Phenotype-specific effect of chromosome 1q211 rearrangements and GJA5 duplications in 2436 congenital heart disease patients and 6760 controls. Hum Mol Genet. 2012;21(7):1513-20. doi:10.1093/hmg/ddr589.
38. Rosenfeld JA, Traylor RN, Schaefer GB, et al. Proximal microdeletions and microduplications of 1q21.1 contribute to variable abnormal phenotypes. Eur J Hum Genet. 2012;20(7):754-61. doi:10.1038/ejhg.2012.6.
39. Verhagen JMA, de Leeuw N, Papatsonis DNM, Grijseels EWM, de Krijger RR, Wessels MW. Phenotypic Variability Associated with a Large Recurrent 1q21.1 Microduplication in a Three-Generation Family. Mol Syndromol. 2015;6(2):71-6. doi:101159/000431274.
40. Fakhro KA, Choi M, Ware SM, et al. Rare copy number variations in congenital heart disease patients identify unique genes in left-right patterning. doi:10.1073/pnas.1019645108.
41. Franco D, Sedmera D, Lozano-Velasco E. Multiple Roles of Pitx2 in Cardiac Development and Disease. J Cardiovasc Dev Dis. 2017;4(4). doi:10.3390/jcdd4040016.
42. Rigler SL, Kay DM, Sicko RJ, et al. Novel copy-number variants in a population- based investigation of classic heterotaxy. Genet Med. 2015;17(5):348-57 doi:10.1038/gim.2014.112.
43. Hagen EM, Sicko RJ, Kay DM, et al. Copy-number variant analysis of classic heterotaxy highlights the importance of body patterning pathways. Hum Genet. 2016;135(12):1355- 64. doi:10.1007/s00439-016-1727-x.
44. Cowan JR, Tariq M, Shaw C, et al. Copy number variation as a genetic basis for heterotaxy and heterotaxy-spectrum congenital heart defects. Philos Trans R Soc B Biol Sci. 2016;371(1710):20150406. doi:10.1098/rstb.2015.0406.
45. Liu C, Cao R, Xu Y, et al. Rare copy number variants analysis identifies novel candidate genes in heterotaxy syndrome patients with congenital heart defects. Genome Med. 2018;10(1):40. doi:10.1186/s13073-018-0549-y.
Review
For citations:
Slepukhina A.A., Lebedev I.N., Lifshitz G.I. Variation of DNA copies number in etiology of congenital heart defects. Russian Journal of Cardiology. 2018;(10):119-126. (In Russ.) https://doi.org/10.15829/1560-4071-2018-10-119-126